Scaffold Ga0257114

Basic Information
Taxon OID	3300028196 Open in IMG/M
Scaffold ID	Ga0257114_1005073 Open in IMG/M
Source Dataset Name	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028196 Open in IMG/M

Scaffold ID

Ga0257114_1005073 Open in IMG/M

Source Dataset Name

Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7765
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

7765

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Canada: British Columbia

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F004368	Metagenome / Metatranscriptome	441	Y
F007531	Metagenome / Metatranscriptome	349	Y
F015099	Metagenome / Metatranscriptome	257	N
F016276	Metagenome / Metatranscriptome	248	Y
F036785	Metagenome / Metatranscriptome	169	Y
F095149	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10050731	F036785	N/A	LLIYLAVAVKSLQNEVFWDKSIMKPAIGEYHGFAEGKVEMQYNIQTLLNNALEMAINEQEKQ
Ga0257114_100507316	F004368	GGAGG	MTGTRLIDIVMDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIFKDHKSGDYDTLTYILEGGFKGYHKMDSSELIEEYKSIEEQWYNLYECSELEFTPYEEDPIHKLEEEKI
Ga0257114_100507319	F016276	AGG	LVHRTLSRRIRGVIRLMIIRGHSGQDIRRMIWRRKFKLLTVAVLILIAVTLIGCSKPKPTLNALDKFWDTLGGKTTDLVEETK
Ga0257114_100507320	F095149	AGG	MRKIILIGMILAGMTGFAQADVNKVITDITSAPVKLHNHIQSEVENAKAYQKNSWADAKAQFARLKAKFIKN
Ga0257114_10050734	F000302	AGGAG	MINTMTQDTKDRIADLERQKIDLEDQLETLGYAGNLVRMHKIEEEIYEIEDTIKKLIF
Ga0257114_10050736	F007531	AGGAG	MLKKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDTFHRAIRTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDDKGIWSEFAEEEILANVDTMIDIENDAKEGR
Ga0257114_10050737	F003357	AGGAGG	MTRNSWIVKQVYTDAKENLGWLFKVVLLAGGFIAGIKLLMFFNVPKEILFPVMWIAFILVAIYKWYSMKYDWKKDDKAYDRASKRYMKKLKGGK
Ga0257114_10050739	F015099	AGGAG	MSHSSKNWQVIYRKQNGLSGCFVWAPDEAQAEKKFKARKEFEYDPEFDRDPEEGNIRSIYEYVAPQSNVASKTKMDELEAFVKFPQFYPFLKKYDSGDEKALAKQIPLTPDNIAIIDGIAKVIPIIRRYRGPRTRGGFMRECHKQDAERVSIYAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257114_1005073

Overview

Ecosystem & Geography

Associated Families

Sequences