NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257110_1000272

Scaffold Ga0257110_1000272


Overview

Basic Information
Taxon OID3300028197 Open in IMG/M
Scaffold IDGa0257110_1000272 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26445
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (27.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007366Metagenome352N
F013089Metagenome274N
F022880Metagenome212N
F026567Metagenome197N
F067697Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0257110_100027210F022880N/AMFFVTAQKRTDRLTICNACEHFVEKTKSCGDLVTEAFTDSKLCGCHMPTKTRLKVASCPLGKWEAEIKQADIDAIKTFLQTENQFRTNGQLAKLYSKVTGTNTQASQCSSCNRRMLQELQKLVNETE
Ga0257110_100027213F067697GAGMKQGYYGNFYERLKIQEFRDCIIKHEEERAAILEQQHKTVTRGAEDPKNVKPYDPEEARLKWRMKNNPFLIPGKNDSSESESEAR
Ga0257110_100027217F013089N/AMGQSKIKTIQPNGTYDSQNGLMYKFEIELESGDSGEVSAKSESRWSVGDEVEFEVTPSKWGDKMRLTKPGFTPNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRSTLISKL
Ga0257110_100027222F007366N/AMRGTPLKETKLGKWFKEKSPKVFNLIAEIVPGADALKALNALIDNTETSDEEKTKAKLLMEELETADRANARNREIEITKNLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGSAKK
Ga0257110_100027238F026567GGAMKAIKILFLVVLAIVAIPVGIVYSFGESLFLITSDILRSIWRAIYHLFRDVSIIVSVTASKFLNRLLMDSGVPFGNHSVSAVLGANQRERTLTGLGLWLTLLLDSIEKNHCRKASERAGI
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