NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302336_10030211

Scaffold Ga0302336_10030211


Overview

Basic Information
Taxon OID3300028236 Open in IMG/M
Scaffold IDGa0302336_10030211 Open in IMG/M
Source Dataset NameEnriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 2, Chloramphenicol (External Submission)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1563
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092231Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0302336_100302112F092231N/AMQFPWPIQVDDFVPYAERLGWKPTSLPDEFSVCPDNDDEITILSSDRDGNVRNLFLSMASNEAEDAEGAAELNDHFVSCVVAGREAWGEPFLLEAGDGPGVTWRFPGDMFTQVTRGSRAVLFNFFTPQGKYQFV
Ga0302336_100302113F092231N/AMIIFPPQEFITWANMLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNNNKFAMLGSNKEGNVYNLYLHMAVNEADDVEGAVELNDHLVSCVAAGRKEWGEPFPLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGRWYFL
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