NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268316_1002012

Scaffold Ga0268316_1002012


Overview

Basic Information
Taxon OID3300028253 Open in IMG/M
Scaffold IDGa0268316_1002012 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044848Metagenome / Metatranscriptome153Y
F102281Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0268316_10020121F044848N/AHRVSCSYETIENAPKQYETHQNMSLGSNGVDQVRLLGKITT
Ga0268316_10020123F102281AGGMGWIGCVRCEKSRRDFVAQTFALIAPIHPVLHRVSCSYEMIPNAPKHYETHQNMSLGSNGVDQVHSLRKIQCDFLARTFVLIEPVQYVLKQVSCSYRTIANAPKYYETHRNISLGSNGVDWVCSLRKNLKXLRGTKFCINCTSSPRFAPSFMQLRNDPKCTQTLXNAPKHEFRVQWDGLGAFVAKNPDVTSWHQLLH
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