NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255348_1064830

Scaffold Ga0255348_1064830


Overview

Basic Information
Taxon OID3300028268 Open in IMG/M
Scaffold IDGa0255348_1064830 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014828Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0255348_10648301F014828N/ALIILRPSKATKAASWPPPKTSSPRGFPPQGVQLEDNRGRRERRALATRELEPVELGLAGAGQIGCLQRQIGATATPEVEYLVTSRPASQLAPTGFLQFKRDYWGVESGLHQRLDCSGLEDRLRVRHKGAMHILGLFARVGVALFVRWCKTQSSIRLRTFPQWRDWQAGHRWHMIRQATEAPT
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