Scaffold Ga0257126_1030072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257126_1030072

Scaffold Ga0257126_1030072

Overview

Basic Information
Taxon OID	3300028287 Open in IMG/M
Scaffold ID	Ga0257126_1030072 Open in IMG/M
Source Dataset Name	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2461
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088710	Metagenome / Metatranscriptome	109	N
F100943	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257126_10300722	F088710	AGGAG	MIEVIAVWLMTMLAVDSEIQTVRTDGQVLETEVSVLENELQQTDGVAMKTATAHSAFYANQQVMNDRMNDKIEELLARIEELEKAPATSFNSVTGD
Ga0257126_10300728	F100943	AGGAG	MENFETGYTAKQIIENFADAYVDMDDVVRWRSNDKVPFLDMVTDFATLGFIADFQVELSENTRKIEQTAFLKEYMFAQANRSEEEKNEERMMAQVAFGSDAKVVNVITGEVL

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