NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268276_1096720

Scaffold Ga0268276_1096720


Overview

Basic Information
Taxon OID3300028299 Open in IMG/M
Scaffold IDGa0268276_1096720 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)45
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y
F076791Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0268276_10967201F076791N/AVNYPHVIDAINFARVPQRAVGRYVDTPVAPPTVIPSVVDPEFMASINKLNSLIEGGIPAFISFEHLRETTNRVNQIEAEVSK
Ga0268276_10967202F049375N/AMLSILIADQSLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLASKRSIYETCEGSIRWNGMVLYTGQIKIKTANDKSFEGTLYINKGNFNYEIKDLLLNRVDLGMKSFPSDQDAVNYFNWSLTHFYPEVDFSVPEIGNPDFFDPQATNPELMAYNHIFPDGWLHKTTTDGQSRTILVPFLYLKYVLNKLAENFGYRLQDEFFISSIELSRLVIYHSVNLSEVIFGLQQLF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.