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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028323 Open in IMG/M |
| Scaffold ID | Ga0208280_1062 Open in IMG/M |
| Source Dataset Name | Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4685 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Deep Lake, Antarctica | |||||||
| Coordinates | Lat. (o) | -68.5563 | Long. (o) | 78.1877 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006455 | Metagenome | 373 | Y |
| F020827 | Metagenome | 222 | Y |
| F027372 | Metagenome | 195 | Y |
| F051583 | Metagenome | 144 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208280_106210 | F027372 | GGAG | MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVINDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYESYDPELRFRLRMTEELGGFADTNCLTIEEIGAKAAERAAEIGRDYAPTDMFAPDEHYEIPTDSAQYVNDIAPQLQQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYHSEAINREI |
| Ga0208280_106211 | F006455 | GGA | MNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIERDGRRSHNIVTLPENYYQDNKIIDCIRAGVEPEDAAETAHEWMEQNNRQ |
| Ga0208280_106212 | F020827 | N/A | MDGAKQPTVKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLPDGTMITKLTVTAFDVLPVVKNIEPVEKPDHL |
| Ga0208280_10624 | F051583 | GGTGG | MTPHVPLTVGRSAPEGTRTNMDYTNPEDAANIDEPTRQQEIGLLSGLVDGNFVCVNHRGFLVNRTDNGSIELSRDGDVLGGRYYVTENNFAGLIEWLNAKVALYGETA |
| Ga0208280_10629 | F006455 | N/A | MNQQVNPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVTLPENYYQDNRVFDFIEVGVEPEDAAETAREWMEQNNRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |