NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10042805

Scaffold Ga0268261_10042805


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10042805 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3810
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057739Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_100428051F057739GGTGGVRYGLSPYIKQTRLVSITMVESVYSAVRTDSLYKADTFGFYNCGGKCLRRGTD
Ga0268261_100428052F057739GGTGGMFTARYGLIPCIKQTGLVFITVVESVYSAVRTDSLYKADAFGFYNCGGKCLQCGTD
Ga0268261_100428053F057739N/AMIPYIKQTRLVFITVVESVYSAVRTDSLYEADTFGFYNRGGECLQRGTD
Ga0268261_100428056F057739N/AMIPYIKQTRLVFINVVESVYSAVRTDSLYKADTLGFYNCGVKCLQRGTD
Ga0268261_100428057F057739N/AVLTARYGLIPYIKQTRLVFITVVESVYSAVRTDSLHKADTFGFYNCGGKCLQRGTE
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