NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306905_104056

Scaffold Ga0306905_104056


Overview

Basic Information
Taxon OID3300028344 Open in IMG/M
Scaffold IDGa0306905_104056 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Club Lake, Antarctica - Metagenome TFF #397 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1675
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Club Lake
CoordinatesLat. (o)-68.5417Long. (o)78.2467Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067288Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0306905_1040562F067288N/AMVLAKDKKLNPNQWEAYLIEFKFCEDTRPDPQLQKAKAQHSVLIINLNKQGYREVKLHMILVGAMGTIYKDYTNKPLADLNLDYHKIKNLTHKLNEHSIRYASALIKTRYALQYSTSNNSQGLDLGATAHNPPDPHYFL
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