NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306885_101972

Scaffold Ga0306885_101972


Overview

Basic Information
Taxon OID3300028357 Open in IMG/M
Scaffold IDGa0306885_101972 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #134 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4635
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena → Haloterrigena salifodinae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074233Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0306885_1019727F074233N/AMNVTKHKISQFSKIIGIALVAMLAFGGLSGAVSAQEENMGDINVTVEDNGTAVNAQNMTLMDAADDTEVEVLETDSEGIVSFTEISYGEYYLSYNDSEGVAYESATFETQTEVSLLDWDVDANTLTLEDGSGSLIEEYVGTQDDFVVTDVLSEESNDASTLIGYAGVVAGTVITLIMLIISLIITLRIFRF
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