Scaffold Ga0306904_113144

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306904_113144

Scaffold Ga0306904_113144

Overview

Basic Information
Taxon OID	3300028358 Open in IMG/M
Scaffold ID	Ga0306904_113144 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #472 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	668
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Deep Lake
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039424	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306904_1131442	F039424	GGA	MTTSPYASLCREYPLMCKFLGTIPSNQLQYAKVPFWNNAQIPLSKHSWEFKIIAICNTKGRVCLNAHNKDWQKELAKEIPEAKWGI

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