NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_100541

Scaffold Ga0306872_100541


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_100541 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14394
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087965Metagenome110N
F100124Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0306872_10054120F087965N/AMQNNTVQTLIDYVKDLTGLDNVSDAKVIRALNFGVDNYSYLRITSSGTWQWDSRNQGDLNRVTALVVGGKAELEDELIALEHVEVLGVDGKYFTVHPKDSRSTGEPLETVYSGNGTPQYYDLDGRTLRLYPTGTATVRLSFSRAHPRYSVDALTGPTGVSPIDEEYIAMYAADRLMIGSADTARVAVRNELAVFEARIKDMASKMDRDTPRRLKATIPSTFTRRSRGKR
Ga0306872_1005413F100124N/AMFWKTKKVVEVDGLPITLSKRQAFNRFTGAITSHFLAYKNGDEWRGLVGYEQFREEMDETRKRQELILDHLKLKYVPETKEPAKLVEKTECNFTGATGNSYMYATSGPTPTKPKKKRGRPKKK
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