NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306865_1001677

Scaffold Ga0306865_1001677


Overview

Basic Information
Taxon OID3300028375 Open in IMG/M
Scaffold IDGa0306865_1001677 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5612
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018656Metagenome233N
F030678Metagenome184Y
F061267Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0306865_100167710F030678N/AKTNSEASLLQQKKNDVLRETLPSVDFKQMLNTYYRNKDYKSFVILYLLLNYNTRNKDLVLRVVKDEDDINQKENFIFIRDKDVVYIRNDYKTKDKYGGKRDVIVAKKFFNAVQELDSLLIDNGNLDRQVKAVTHGINQSTMFKMLITQNNNLKSIAKSSRNRGTNMNTVATSYDIT
Ga0306865_10016774F018656N/AMPSKYLFLENAQRNLSVWDNLPTLSQSSRECYISVSSVKLLFGDIPLFYAVRLKIDLPVMNYASSSNSIPVIAMLSQGTNNITSSGTTENVVFELIHADQIQLFSNDNLKRAKFVLENEDGEEIVLEDDDRLDIMLKIDYVDQLAVTNQYISEVPKHL
Ga0306865_10016775F061267N/AMAKRETFFNMIQSSKYLDEIDLKSRDKQEKTFETGNFRWTLIKQYFGDELEIYIQYTNLHYLFENKLNHKLTKKAFHKEAILWKCYVFDAEYVNTKNMYCKVNKIKDGLIYTNFNVSKHHISYV
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