NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306865_1009477

Scaffold Ga0306865_1009477


Overview

Basic Information
Taxon OID3300028375 Open in IMG/M
Scaffold IDGa0306865_1009477 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2497
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008123Metagenome / Metatranscriptome338Y
F009218Metagenome / Metatranscriptome321Y
F009454Metagenome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0306865_10094771F009218GAGGMLQKTLVKMFDGVFFLKDEPESATGASWKFRRKLIFGSYRLGFAMIIFGAVTFLVDQWGVGVTLITGGVSLISIITTAYTVSASWQDGKNNNQDWT
Ga0306865_10094773F008123GAGMSEESTSVRITNAQVYEKLMEVNENQIEMFAELRGLKYLPEKVADMETRLSKVELIARLVYGVYGATLGAVAVGLVSLLRG
Ga0306865_10094775F009454AGGAMYEEIEAAIAEVQQPRSRFQLERFVTGSHATPEMRYYQTCLELQDMIYKFQVAKIGVQKAELKIKRLRETKDEMKELKAQETEIGLRQTRLAMIGAERELNDLVAIFDSFETKFTRAEIEAAQPDYWNARLTGNAKAMLMGGTSVNAAHIEAMEQAGVLDNFIEEVQQSKKELGL
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