Scaffold Ga0306865_1029409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306865_1029409

Scaffold Ga0306865_1029409

Overview

Basic Information
Taxon OID	3300028375 Open in IMG/M
Scaffold ID	Ga0306865_1029409 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1406
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088351	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306865_10294091	F088351	AGGGGG	MSRESIYGDEPEFTVLKMVDGKETWISLAQLAAELEAEKIEEAPIKDCPVCGSRMHKVILGAPNDDDLANPNEWVIFTGCIVRQNTPEWSCLKCEDTNSGEFDPPAETSPDKPDA

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