NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0306912_1000275

Scaffold Ga0306912_1000275


Overview

Basic Information
Taxon OID3300028376 Open in IMG/M
Scaffold IDGa0306912_1000275 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31916
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046955Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0306912_10002759F046955AGGAGGMAAPRQMTANTLNALKGWPQMHAVDYHTEFDSGIPSGDLPVLAGSVVSLNSSGNYILGVGTASVMPLFLFNSSDDPDVSNDGGDASTDAGVFIPISPTGQAMALVAVGAYELVSTAYVDASYSPNDPLTADLSGGSNPGKLKAGTLYTDMIVGIVSRGVVDNGYGKNALAFWPFPVFPTP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.