NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306912_1002009

Scaffold Ga0306912_1002009


Overview

Basic Information
Taxon OID3300028376 Open in IMG/M
Scaffold IDGa0306912_1002009 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8240
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007738Metagenome345Y
F014583Metagenome261N
F041484Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0306912_10020091F014583GAGGVTTRDTRKAFLKLLDQTWPGVRSEFVAAMRQARAGVDMKALEAAIVRGDVDAAFRALRFDAADLFKTD
Ga0306912_100200912F041484N/APTLDWVWDELDMLRRWQDEAVDAERDALEAERDAALDEMDALSEAAEQRDALSEAVRLLLEPEPDMEHVQAVLAGGW
Ga0306912_10020092F007738GGCGGMSGADITADVQAAYVEAGIAAGDGVGAVYVTITRPGQPTGPEWNPTPGAPLVHTFTAKPSSNAYTQRTGLALGAKEQVYSLVNIGVTIAPSTSDVLTIDGINWPVLEVIPVDSAGYVLTWLVRVSK
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