NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306912_1023934

Scaffold Ga0306912_1023934


Overview

Basic Information
Taxon OID3300028376 Open in IMG/M
Scaffold IDGa0306912_1023934 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1142
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F008116Metagenome338Y
F020291Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0306912_10239341F001408N/AMIKKFKNYFKRTRHHLHAIVGITGGFLACLALSWVWLGFRNLEALDKAMWFLAPAFIIGLIWEWRQGIINKWDIFVSGISICLGVFLCGLLF
Ga0306912_10239342F020291N/AMYYTGTKTECEDYNLEVYNGTESMKQDPFTTSYASIQEIEGQFYILKHKDFESNMDEVSQPPKNTEL
Ga0306912_10239343F008116N/AGSDIFASKIFDYSGSDADTANATGSAQPKKGVLNGVTSLDFDGVDDRLTNTNTVSFLAGENQFSIAVYAQDFDNSGKFGIMVDKFSPDAGGKQFGRRSDNIAILATGTLAFTPYQNVQILASGTSTTSNVVTGFINGVQVLQETRSVNHIGKSLGCIADRPTLFFAKGQFQKNWDFNALPTESQAQAITDYLQAQFNITF
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