Basic Information | |
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Taxon OID | 3300028381 Open in IMG/M |
Scaffold ID | Ga0268264_10000095 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 230806 |
Total Scaffold Genes | 186 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 138 (74.19%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020218 | Metagenome / Metatranscriptome | 225 | Y |
F028212 | Metagenome / Metatranscriptome | 192 | Y |
F047518 | Metagenome | 149 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0268264_10000095160 | F028212 | GGAGG | MDHIQFKTNQTAAGYVANGLDELTQEAFELHMMGCSECVADVEVWRAIKLEMPRQHGNVRTLTPRRKLAAFSDWRMAASLVGAGVLGATGGWLGKATTATDLDSTRTVVFNLPSVSRGADDCTAVRLASDTRLAVLRVPGISKDLRVVALDSEKRELPAGDYTSRIQPDGSQLLQINTSLLAGRQVHLEARRADGTGEPLGCITGSLP |
Ga0268264_10000095163 | F020218 | AGGAG | MPSSRKFILASAIAAQCLVGSLAGSPAQAADIPDNFFQEWTVSKNCTEQHAGLAARVAKGLKFRISRDTKAADGSYVFQTENTGQQRWNANWGGIKLQYRPGPEMKTLPADFECIPGQEASSSFLAMSNYAQATEPQYEQRHWYALARINGQLEHILIFPSTSASGPKAVIVMQSVTASNSIQLDDNGVIHLD |
Ga0268264_1000009598 | F047518 | N/A | MDEARRIVRFRGGVSCRRDEGPLGLTLIGRTIDRSDEIATLAFVGSAPRGLPEALEDATVEQVGPGQYRIWSGRREWVFAARSAHLHREVATTFYRAIAPRMVPWGKKLFWRIVLSMVSSRFGKSLLLTLRRR |
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