NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268264_10531062

Scaffold Ga0268264_10531062


Overview

Basic Information
Taxon OID3300028381 Open in IMG/M
Scaffold IDGa0268264_10531062 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1151
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008904Metagenome326Y
F076052Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0268264_105310621F076052GGCGGMIETRAKPRLRRCLPALLSAVGHWDGSAAGEFVMAAATPKAAFMFCADEWPDVDESAFQTHEVARALVAAVESSAKNKSDVILGATAVLLGEAGLAAQRAEHERIAGNGAVPLIVTLVEHDGKSVAVMVTVIPMAPATLH
Ga0268264_105310622F008904GAGGVFKFAAVLLLLSWPASAEERLYYRFSQWAGLQEDDRAAYISDLLDTLAMAATEPAQRTAQHYSQCITRSRLTTRQLANYLREYGRARPELQANSVQDAMNNYLNALCGRPAD
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