Basic Information | |
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Taxon OID | 3300028392 Open in IMG/M |
Scaffold ID | Ga0304729_1000001 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 340548 |
Total Scaffold Genes | 501 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 296 (59.08%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006141 | Metagenome / Metatranscriptome | 380 | Y |
F046245 | Metagenome / Metatranscriptome | 151 | Y |
F052595 | Metagenome | 142 | Y |
F093877 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0304729_1000001101 | F093877 | AGGA | MAILPATGTEIVMGRVKKAYSNVAAAGGQNIRLSATLGAYVGQSASTQISLSSRFGGQTIPYTY |
Ga0304729_1000001213 | F052595 | N/A | MTSEKPAQGIMLNADYVDAKTYTIACDCTDPDHSIHMWIEAEGDNETKDITLTFYVNTTTPFWKEGFSRIKSAWDILIHGYREDQHSLILKKQSALNLAETIKSTVNDLEKL |
Ga0304729_1000001492 | F046245 | N/A | MWTYVLTFFAVFFTDLIYIYFVKSIQNDHPWRAAWWSMVVTFTASIAVINYTTDHLALIPALLGAYFGAYVGMRVENITDRQR |
Ga0304729_1000001493 | F006141 | N/A | MIIEIFFYGFVTAFGWWTANHYVIEPYFPPSVLEQREDKKKEDKKD |
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