Scaffold Ga0304729

Basic Information
Taxon OID	3300028392 Open in IMG/M
Scaffold ID	Ga0304729_1000201 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028392 Open in IMG/M

Scaffold ID

Ga0304729_1000201 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41096
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

41096

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (87.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_100020156	F099270	AGG	MTTNFQYAQAPNRKGNQSKHTPTGTGGATGVCGPSHGMSGPKGQQGPAKATGNIASRNQKVMVSTHADYCGHIMNDGYMNSDRNNYLK
Ga0304729_100020157	F040590	GAGG	MSAYGKVISGGKAMTSGLTKGINDKLKNYAESHKYSAMLATAVGKTFNQNPLSDPHHNDVNMNAKKSFTTPKLPSKV
Ga0304729_100020165	F004695	AGGA	MLDKQNIVVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEEDQTPQEGMDSAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPSKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPSDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYSDDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSEENRLTRQQLIGQAQAQFMQLMMQLDPSAPEMFAKVRRPFEDTLRVLGVKDVDAYLPTMEEAAKVAQAKSQQGPSPEQKELQSKTDLNNAKVQESQSVSALNMKKAEDVDTDNMFEALAAKRGKLSAVEID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0304729_1000201

Overview

Ecosystem & Geography

Associated Families

Sequences