NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304729_1000239

Scaffold Ga0304729_1000239


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1000239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39505
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (96.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F001531Metagenome / Metatranscriptome676Y
F003658Metagenome474Y

Sequences

Protein IDFamilyRBSSequence
Ga0304729_100023911F001094GGAGMKTKALEVLKSYLRAAVAAVLAAVSLGKTDPKDLAIAAAVAVAGPILKALDKSAKQFGIG
Ga0304729_100023925F001531GGAVDWNRIEPWDYIVVGVSAEYHKKYDMVDKEDIKQALYTWFLEHPNKLDTWEAIGPRDAKNLIYRSLRNEALDYCQRWKAKSVGYEVSDNYYYEPDMVEAVLPAVLRGETGITHKLNLERTGTPSAPSEGGNLMVLMLEVDYGFWKLNKEDRRILFMKYAESMPFTEIATEFVLGSDDAARMRCNRAIRRLINKIGGYRPYKDEDIEEAPVSTETEAPMAEL
Ga0304729_100023930F003658GGAMEGLVLVNDLTGTPTFACICGCQVFNINVKWDEETRLVGWYDLVQKCIECGTITTAPTPIDEIDWREV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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