NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0304729_1005159

Scaffold Ga0304729_1005159


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1005159 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6906
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F027396Metagenome194Y
F052345Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0304729_10051591F052345GAGGMDRRTREYKELVKMTPTTEELLTEEIDGELYLYKRSAQCKICNTSDDLRGIVDSLLLFPKSYKEVLRAIEPLQEKLGMPKEERINYENIRNHQKNHLPFEKRMVREVVERRAREKSISILDASQRMLTAEAFYEVILAKGWEEIAMGYEKPTLTQTMHAMEMLRAIEKEDSSDYRPEDLIQQLDMILLAIRDVLPADMKHALFKKIEEYQAGDSPAKKKSRRSNQAELDSGDDYIDADLEEDF
Ga0304729_10051593F027396GAGGMQEPAPKPRKSRKQEIIQGQMTWQILERLLNNYMEWKEVYLDTGNPDLQLLNGVTVNIYDLMKGIDSLPPRQKQAVVLSCLENRKEVEVARMMGFQKWSSQVGMYKRKALKNLCETVWKNYEQ
Ga0304729_10051594F021233AGGAGMSTFKKGLSPLETAPEPELGANHDDRFSEMHDFAVRAFTWKTKQEDLALLDSIERVVDQFMEDYMRPAEVIIARFNTDKGMSADEQDRLFLNLQSAITAIEEEVTRRYLKAQYSWYMLDDKYWAAWRKPSSGTQKDLEAVAKCETQSDRQFYFVQYAAWRMINDKVQSMKASQRYIQNQMYRRG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.