NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304729_1070928

Scaffold Ga0304729_1070928


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1070928 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1248
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F030763Metagenome / Metatranscriptome184N
F035306Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0304729_10709281F022886N/AIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYKITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV
Ga0304729_10709282F030763AGGMLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAIIREPLAEATETFETAYHFSLVEDDVRPANIIEDVIYHSVLEDMELFGESLTHYLNTI
Ga0304729_10709284F035306N/AMIKLMGIVTGKPKVNEALDIKPIVAKIAKLTDRNDHTGSVLELATFLNDTKSVKLLQAIQTIHTIEGSMPSEISKYRDGILKDLMGKVKSKYGADAYKEINGAF
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