Scaffold Ga0304730

Basic Information
Taxon OID	3300028394 Open in IMG/M
Scaffold ID	Ga0304730_1001221 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028394 Open in IMG/M

Scaffold ID

Ga0304730_1001221 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20031
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (17.65%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20031

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (17.65%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F041020	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_100122116	F019647	AGAAG	MKITKGIVKYGAGAPREGQYGFSINILVTLEDQSQVRVYGKPGDVIERYKSGQAITLIDDNGKYKVLEESQTMPAPTGVAVIEQQIAEKPDLAAIVFEMSAIYTQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR
Ga0304730_100122120	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANLDQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRMFSAETLELDDDIKFYGKANMHTIGKILNGYMVYRRRIIASHDNEIADLRHQKDMEERGQKEREKLYAEFPTMIKDFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0304730_100122122	F041020	N/A	MKQTPKEKAKELFDHYYIIIQNVGGELGNEILVSILAEQCALFFAMQMQQEKWDEKKYKAHEYWEEVEIEIKNIGLYAM
Ga0304730_10012218	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSKYPPRVAAVATVIALLELWFSIQGKSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNLPKPKESALKMNATTSHPIKFTMAICFMFVVYVLPAQKNHFMAYNYMSVEKIGGDKLERTFYDTNEEQHYIDTITTDFLTSWNFWDGYSRSHLDNDLFMTYGTQTMKYIKSKQLWYYRGKYYDYKDLLKFLVRYSKKNFVNKKIQW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0304730_1001221

Overview

Ecosystem & Geography

Associated Families

Sequences