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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028394 Open in IMG/M |
| Scaffold ID | Ga0304730_1010060 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5576 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004133 | Metagenome / Metatranscriptome | 451 | Y |
| F024558 | Metagenome / Metatranscriptome | 205 | Y |
| F033434 | Metagenome / Metatranscriptome | 177 | Y |
| F039639 | Metagenome / Metatranscriptome | 163 | Y |
| F039640 | Metagenome / Metatranscriptome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0304730_10100601 | F004133 | GGA | MKYTKEITDKLIADYKAGVSVSTISTTLDVPERSVIAKLSSLGVYTKKSYVNKRGETPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLSQTATESDLLEVN |
| Ga0304730_101006012 | F039639 | AGGAG | MNIDREFIKWFYEDEYPDLGCNRREVYGRTQADASIDVVDYWMREAFRAGAQATLDKTEINALQEFEAFNINRNYPL |
| Ga0304730_101006015 | F024558 | AGGA | MIVILYTEDFEPIIPVDLPLWLLDRLEQEGAVRVAVNRPSGFTDVRIPVGNLDTETPTVRIRYEKLRWRDGTLKTLLVTPDEELALTLNPEWLPGQRGPIHTYMGAMRKMHEELIKQIRKNQD |
| Ga0304730_10100602 | F033434 | N/A | MLFKKQEIHSIDFTGTEGLNLEGWETWAEQMQLSHLHGWLLPQLVAWYGSWTLVLDENSNYDCLATVKLNCSDPKSRAFYMLSRVKRSLLVSQQTKTPDYASLTPLILMGLKRMQGINYETFRSSTGLQYLLEPRLFDAVVLGSEDLEVCNGLGSNRLLEIQKQGLTTKSGKTAGSMKPARSTWSLTGIQDTEIAHLPKLTQTILTQCWLAHPELRTPYMILDLQDWDRMPQPLVTNDIFKAVQTQQPTKTKELADVLPWDL |
| Ga0304730_10100604 | F039640 | AGGA | MVVKMNIDRLLLEATRQEGEIDILHYTNLVLQEACRLIKETPITGAFTTFDQAVAETQRADCFKSVYNQIVKNIEDATNT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |