Basic Information | |
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Taxon OID | 3300028436 Open in IMG/M |
Scaffold ID | Ga0256397_1000176 Open in IMG/M |
Source Dataset Name | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4659 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 34.9283 | Long. (o) | 22.0216 | Alt. (m) | Depth (m) | 3337 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006550 | Metagenome / Metatranscriptome | 370 | N |
F036977 | Metagenome / Metatranscriptome | 169 | Y |
F056157 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0256397_10001762 | F036977 | N/A | MSLDLTKQRLSSAEERVNRFIDQNLLLWATEEILLPGQTNIASSISQRASEALTLEKSGFMKVDLKWDFRSEEGAPIHFFLEYGTRPHRIEAKGREHGGADALHWTGPSGESRFAKVVQHPGTEGKNVIAAIKEERTPALRERIIKETQNFMEIDSI |
Ga0256397_10001765 | F056157 | N/A | MARKKLSSDDYWAQQIIRAQQGGKDYIFALVRRKYDEDDIEPVGPGEYIGLDQKKNYPKMTDNDPESDTFGKRIDKPNAEPSGIKVVYKDTFTPANIKKYQQMAGNNNFGETSLVYKFKQINITADKINEFWTTPMDKIYNTYVLKEQVIKVEENKSNNR |
Ga0256397_10001766 | F006550 | AGG | MQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVTSTDRSTANPLLDLGTAQLLIEGSGVGGKLNRVGMHPLDFAKYMGNTFIRGVASTKPSEVTFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGISTPTDWT |
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