NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0189899_104407

Scaffold Ga0189899_104407


Overview

Basic Information
Taxon OID3300028445 Open in IMG/M
Scaffold IDGa0189899_104407 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 61 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)668
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016550Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0189899_1044071F016550N/ATIRAVPLFWVLVFTVAVVTTALADDQEKATKEIKQITSISVDANMRSIVNRTMADMLKAKRLDLVNERHDLNVNYGGLFLAHQLTAAGVKMEDIAAQLKAGKKIFDIANDGHANWKEINSEVKKLNKKIDDNIEKNFRDAKKLAAVDQADQYDAKADKVSADSDISKDEYTEAQNRYQHLHDVVSSSQLPIGDANLRNSGAGAGSTSGVSGPPAAVIGAK
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