Scaffold Ga0268302_100401

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0268302_100401

Scaffold Ga0268302_100401

Overview

Basic Information
Taxon OID	3300028464 Open in IMG/M
Scaffold ID	Ga0268302_100401 Open in IMG/M
Source Dataset Name	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_15MAY2017_LD1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1569
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031344	Metagenome / Metatranscriptome	182	N
F040454	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0268302_1004011	F031344	N/A	RNEFQGASSGQGYPQGWTSQWEGSQEQAWGHAAAAPPPFSNYSYPPSSYQGEMPDPSFGAQYFDLPQPEQGVRIMGAYARRNMEDIDAIRRHTTQLEDGTAGIAYQMGLLGLAPPEQFNGGAFQQYYDQGYNARANQGD
Ga0268302_1004012	F040454	GGAG	VHKTFINSLDITLEFKGASPRERLKPTEEEKGQAGRPRGVGPAGLLPVGLHFFGFFFCELFDASQAYVLLNFALDSTVLPSK

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