NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268317_1000115

Scaffold Ga0268317_1000115


Overview

Basic Information
Taxon OID3300028468 Open in IMG/M
Scaffold IDGa0268317_1000115 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1970
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046126Metagenome / Metatranscriptome151Y
F093139Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0268317_10001151F046126N/AMVPNAPKPYETHQNRSLGSDGMNIMDLLQKFLMQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVHWGGSGAFIAKNSDTTLWD
Ga0268317_10001152F093139N/AVARTFALIAPVQPILQRVSCSNEMVPNAPKPYETHQNRSLGSDGMNSMDLLQKFLMQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVHWGGSGAFIAKNSDTTLWDELFHYLHQFSPFCNEFHAVTKWSQMHPNPMKRTKTGV
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