NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268337_1000433

Scaffold Ga0268337_1000433


Overview

Basic Information
Taxon OID3300028469 Open in IMG/M
Scaffold IDGa0268337_1000433 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1522
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000255Metagenome / Metatranscriptome1449Y
F082001Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0268337_10004331F082001AGGMGWIGRDRCKKCRRDIVARTFTLIAHVQYVLKQVSCSYETIPNAPKYYEIDRNISLGWVDGVRWLRKITTRLRGTTFCINCTSSVCSATSFLQLRNDPKCTQIL
Ga0268337_10004332F000255AGGMGLIRSVRCKKLQRDFVVRTFVLIAPVQYVLHQLSCTYETIPNAPKHYETHQNISLGSNGVDQVRSLQKITT
Ga0268337_10004333F000255AGGMGWIRCVRCKNLQRDFVGRTFLLIAPVQYLLHQLSCTYETIPNALKYYGTQRNISLVSNGVDQVRLL
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