NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268319_1001592

Scaffold Ga0268319_1001592


Overview

Basic Information
Taxon OID3300028473 Open in IMG/M
Scaffold IDGa0268319_1001592 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1133
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011828Metagenome / Metatranscriptome286Y
F055377Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0268319_10015921F011828N/AVQLAPFGCVTKLSAKRANLMKKFVPRSRVGIFRNERNRSTPLDSKLMFLCVLYYLDAFGTIWLPYKTRCKTGRSGAKVRAMKSCQNFSQRTYPSTLLNPKLMFDIVSYYFCAFGTVRLRYKTQCKMGQIDAKVRATKSRWNFSRRTQPIHPIGL
Ga0268319_10015922F055377N/AVHLAPFCCITKLSAKRAKLMQKFGPRSRVGIFRDERNRSTPLDSKLMFWCVLYYLDAFGPFGCLTKLNAKRAELVQKFVPRSRVLSFRIKHTRLSPLGPKLIFWCVSYYLGTFGTVWLPYKTRCKTGRSGAKVRAMKSCQNFSQRTYPSTPLNPKLMFHSVLYYFCAIGTVRLRYKTQCKTG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.