NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268319_1002770

Scaffold Ga0268319_1002770


Overview

Basic Information
Taxon OID3300028473 Open in IMG/M
Scaffold IDGa0268319_1002770 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)953
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004317Metagenome / Metatranscriptome443Y
F019773Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0268319_10027701F004317N/ACTGKVFGAVRPCLSPYRDERQMNLSYMVLLDMWNMIGQKFLSFIGC
Ga0268319_10027702F019773N/AKYNSPYHIEMGTYVLIDLLXAGGSVAPAQPTSLRXNXGILALTCSTCLEGLYRKDSNGAHPCRVIDRAXEPRIPSPCSSKAITHATGSKIGSSRSRWSSGTEYYPTGLKTHIECLDIFFENIIVRTTLKWAPKFSSIYYEQVALLHPPNRLASNETEEFLPKHVPHV
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