Scaffold Ga0233369_1021110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233369_1021110

Scaffold Ga0233369_1021110

Overview

Basic Information
Taxon OID	3300028479 Open in IMG/M
Scaffold ID	Ga0233369_1021110 Open in IMG/M
Source Dataset Name	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1172
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.04	Long. (^o)	-122.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074001	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233369_10211103	F074001	GAG	MHKNSPGAQLDQVSAKTDEVQRELEVASAELGLTHGALDRHLPPAQRNGDVAWAIAQNAALERKVAQAAEDLEEVVGMLEQVKAEVAG

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