NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257113_1149711

Scaffold Ga0257113_1149711


Overview

Basic Information
Taxon OID3300028488 Open in IMG/M
Scaffold IDGa0257113_1149711 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)1320
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017398Metagenome241Y
F031252Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0257113_11497111F031252GGAGMKTFKGYLTEFVQQSTSDYVFDTPGGDSSSLQIPISGPMFKRIWPD
Ga0257113_11497113F017398N/AKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTYNTATRPAEWVKDSVIPRLGKIPHKHWKSAAELSTYITQVADAEVRTFGGWARKK

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