NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257111_1075306

Scaffold Ga0257111_1075306


Overview

Basic Information
Taxon OID3300028535 Open in IMG/M
Scaffold IDGa0257111_1075306 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1087
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015741Metagenome / Metatranscriptome252Y
F080139Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0257111_10753062F015741GGAVVCLTFSQGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLESNPPEIVSKDLAQVSRNNDIYKEVCKTDKGVVDKLQDKADRILK
Ga0257111_10753063F080139N/AFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKIRDRSGMPDVLAGM

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