NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10009679

Scaffold Ga0137415_10009679


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10009679 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9560
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012102Metagenome / Metatranscriptome283N
F014113Metagenome / Metatranscriptome265N
F034133Metagenome175Y
F036171Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100096791F014113N/AALEVVNDGLNAHPASEGLLFLRSYFCYKIADSISSELSALPQPIQPLGEGVLMIDGAMTTQMLGRFQEIVKVLGDAEEAINEILQVNPRNNEVTAFRAYIDSKLQKLGQESENMRLTFTNTPNIAGGFCVGCRKNISFDTQTVVFRKSSSAQLEVWHLPCFKQLGNKN
Ga0137415_1000967910F034133N/AMICADCLRDLQDVVKAEDSNLYLCGLCHEKERVHWRILLSEDMDEQALLARMLRVIERADQSRPKEYGRTPSKLS
Ga0137415_1000967916F012102N/ALKTAEKVDSWWERANKKLAESTLKTRFTLNKDGRVEVNPPVLPADYEETRLLFEIVDDVFAMLEEEAEEAELDQPDS
Ga0137415_100096798F036171GAGLDKFSTIRTIKLSYKIDQVENGWTVTTTDGTVFVYPDAKEMTEWFCMVVGVPFLYRKVELDPLEEEIRKLTKATASLLA
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