NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10013876

Scaffold Ga0137415_10013876


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10013876 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7994
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013075Metagenome274Y
F026836Metagenome / Metatranscriptome196Y
F037660Metagenome167Y
F082433Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100138761F082433N/ATPGQFDIVALWQARTSDEIVKSAFEKLSTLHGITRSETLLAPTPLFKQ
Ga0137415_1001387610F037660AGGAGLTEEYSAKKKTYPRATAIVGGLIAGVVAGLIAYLIAGLVGLIIAFIIGAITGSRATLLALRGREKPS
Ga0137415_100138762F013075GGAGLPSEFLPRAHSKRLGELDASNWKDLEAGRNTSRIDPAIRGIVSSLNHKGYRTFSSCSGGHRANLRRRYDRHESGYIAFSPPSRIPFALYLALRKKNQDFMFEAEAVIHDGNGDRRETIYTQLDWQLLDQRKPKLRYYETLFSEIEHTIHGLPRRQDGHKDVLTGLLGKPHLPLVSKIVSGQMKRFTR
Ga0137415_100138769F026836AGAAGGMTEETRSIRRLVMGIFSIALGIISLVAFFSVTYIAGIGFLGGFYGLILIALGVGLIRPKKEHKKEEIHRI
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