NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10019135

Scaffold Ga0137415_10019135


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10019135 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6794
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011834Metagenome286Y
F026533Metagenome / Metatranscriptome197N
F046278Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100191351F026533N/ALAKYPVPVEKKRLSIKDVQKFDATPLYLYTAKDALNRVTVLKEANKDAYLIAGRYSSSTGDHRLYTPLSEDESKEIEKLVRIGRKDATISFL
Ga0137415_100191353F011834N/AMVIEADFYRVRLRFKRLFADPSIFEDQKNAARRYLLPKTTGDKTASVYQITSDIAPTDDVGKPSETAGTARYVHKGRVVRSEYFENANVTLEYADFGSGTSPSDHQRLWKKGKWGRMSFKLDEFRHEHLRIEMPDTSELYEMLRARADPTTLVDVELPELPDNFFRSAVGYLETRLKQLAETHHETIEIYVARDLLLAEKEALEKRLTRPSTQSTIYIMLSKAEELPML
Ga0137415_100191359F046278GAGGMGFLVNFERIVESLMSLVSIVGFASTLFLLFIFLTTPPVTTITETGVGVQGIYTYKVTNIAIQGVPFFWVFTSLISLSAGHTYKSAKHLFLHAKGKHPPPHVADPK
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