NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137415_10026418

Scaffold Ga0137415_10026418


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10026418 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5731
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011833Metagenome286Y
F016379Metagenome247Y
F042822Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100264182F016379N/AMPGYPVRFVKLLYGIILAQFIVIAILLAGFSSEYLSNVYFRIWVDSNFPQLGLLLTGQVDALLIGMALGGTILLIQRVKNEASIAERTTATLGRPSSLAQSSDLLPNHATRTTIVEVARETPDQVLGELDKHDF
Ga0137415_100264183F011833GAGGMKAFIASFVKGQALLLAPQPILLLLIILNKVSLYYCAPVIVSLAVLWGWFDYSGKVQRRGASVLKKLERLVDDFGWLNFQEGGGAGNEMVVSLLDKASFGSSALTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTSLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSETKVRALQVDPWFNTGTEISETKQSPQ
Ga0137415_100264188F042822N/AMLLITISLLIVLFYWRLFVVKDLNLLSTVFWIIFPDLASFIPIGLAMHGTKEWPRWGSGLYNFLHTFLVWIPIFTIWSIFSGAVQWPILGWAGHITADRSVGYYLRASTRRLD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.