NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10034895

Scaffold Ga0137415_10034895


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10034895 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4938
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001138Metagenome / Metatranscriptome767Y
F011502Metagenome / Metatranscriptome290Y
F046212Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100348954F046212N/AMGGSCPDRRRLGSNLQNRIASSELVVIGRVTDVRRWTIPKSAASRYHTSEHSADWHEAILQIDSVLKGTKPKKGKMVVRFPLSRDVAWVNSPKFERLQRGIFFLKKGQVSGDPTASLGGYQVDVYTCLRPGDWLPLSDEALVRSLLKN
Ga0137415_100348955F001138GGAMLAVVHFRHGGIPMAPAILSVIAFLALVVWRFVFAGMHRWPLVRPIAHRQHRRNDILQEGLHISDPGDVAVVAGNVFENSSGSLDPIDRRDPAIVFLRRVVALTGATQMDDGYVLNVGATRFHVRNGYIRRLRDAADPKCGYEETCFYPVHNGMPKAEEIATALLQLANNPALFDKWALKNGQAVKADGQIFSRAE
Ga0137415_100348956F011502N/AEEVNEMIAEYEAQTGAQPFDMATGERIEKVTRDQNEVLMVHPIAGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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