NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10053136

Scaffold Ga0137415_10053136


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10053136 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3921
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007071Metagenome / Metatranscriptome358Y
F007642Metagenome347Y
F008127Metagenome338N

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100531362F007071N/AMSGLSLRLTEIRSFLLPVSQFVAWPIFFLLTSAISQQPAYFLALLLVLAADLVDKSPRNRGLFRDLIAGGTTTLLALFFNNLDGVAVGVIVAVAATSRLGQKLN
Ga0137415_100531366F008127AGTAGMSDNFLPRAHSKRLGELERSNWKSLRDGRNFDRIDPAIREIVSLLNKKGYQTFSSCSGGHPTNPRWKVNRHESGYLAFSPPSNVAFTLYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRKKHKLEHYHRLFSQMRDIIEDLPRAPNNENPVLAGLFEKANLQTGLRIVKGQMKRFTRS
Ga0137415_100531367F007642N/AMPSLTAPEAIIVPGKPLAEVLVEGELSPFEHEALYRILRKSFRLEHPSYAALIDEDLATRVNVTFHYPYVTTIFTDVLQENWRDLKELLRQVRYRRGRAGAAVTFTFIGEKNRLVFKSGVLEEKELSSAMDQIGHLTGILGQMLRPETMEKPLELVEAAYDKRSDRWHEFKGFSSTGRDESYVFDESVFRWLRS
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