NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10065173

Scaffold Ga0137415_10065173


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10065173 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3505
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006340Metagenome / Metatranscriptome375Y
F007853Metagenome343Y
F015711Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100651733F007853GAGGLSETSPVEQELLESKLEKALDDAWSKVNVALDKTSKSSPDVALGIWFAAEAVEYSSLLFNLTYGLEDLEPAVKIRKGEVALVLLKDSIEFLKRAREGRRKSATDAYVNLRTAADYLKAAHLDQVKKSTKKRG
Ga0137415_100651734F015711N/AMKSTDSQKTHGHSNLLRSLVLGVIVLVSAWSAVAYFHVASLQEYVTNIIKPADSLLPITLIVTFGGFISSIPILRSLSRKDKTPQAKVQPILQYRSPQIHPLFMTSRPARDTSFVIRKTKSRGRISRNRDGERLPPSHPE
Ga0137415_100651735F006340GAGMGGTNLPGVRGTSTSRYVALVAALTALFTAYGYVSSIELRSVTRSLDLFFLLPAFFAILVSLTGKKWGGTILGTLIGLIFLGTPSAAGNFSPHITASLVVNGLVFDLYLQHSGGSLLDPSRKHLVLAGTLGNLAMAPTGLLVLQAVWGPSSALIWAIALIGDTLVGSAGAFFGTIVVERVKGVQARRVLEAKSAVRVRV
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