NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10066761

Scaffold Ga0137415_10066761


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10066761 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3462
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003897Metagenome / Metatranscriptome463Y
F011033Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100667611F011033GAGGMTALLSNGFFLLLVKVYGAFLVLGPVLLRIQFRFNAKLNPQLVSVESLPPDVQQFMAPRVQSIAGLGFDPVGYVNVGKMTSGTGRFMALFSNPRTMEWANVSVVKSASRMAGYIEFITRCSDDAQVDTNTNSTPSVLFPLPSYHVFRFPQVKDAFTLYRAHRMLVQEKIGGSKPELPQRGQELAELKRRLERYGPRQQERGYMYLHKSGEYFHLTWKGAILGAWRSVWPVASLRRWWMQSREQDRLRSLGVAQYRPS
Ga0137415_100667612F003897N/AMPDEDDRPCADISFASSSGLSFPAMYNCRECENEINQATEICPHCGADLTMSVAGSQPATKPSLQKILLRWGILLGVLLAAIWSFLWFIVPERQGNPTTQAEARAVESLRQVRSALADYASAQRGYPRQFEALGEPVRTAAQLAQSVNYQLQYTPGPVEADGTIRSYALQARAGNYGFLSFYTDNSGVVHATRENRSATAQDSPY
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