NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10075548

Scaffold Ga0137415_10075548


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10075548 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3229
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012563Metagenome279Y
F039072Metagenome164N
F078506Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100755481F078506N/AGLSSVQLVSTAFIRALVKGEKGRRGMQRIPIDTGVFFTILPSEILFEIGAYPEELKARPELEGGDSLEARIYSVVVAVQGREQVTLALTFEGAQPVLGAKVLEDLGLNVDSDSGLLGPSRHHGFAFNYEP
Ga0137415_100755484F012563GAGGMRDGEVFLGGFASGFLARGLTHIGYGIYFTTSRLIGIDLGANGARALGGTMAGFIHGELMPKLSPEESAKTITDLEQLKEFDMEKDQISRIELKKPGMLGTGHIVITLKEGRPEKITLRHRIAYDRLMTLTKAFSPELARSF
Ga0137415_100755485F039072GAGGMSLLGAVTVVGGISLTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGIVANTWPLIRPRR
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