NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302149_1054249

Scaffold Ga0302149_1054249


Overview

Basic Information
Taxon OID3300028552 Open in IMG/M
Scaffold IDGa0302149_1054249 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1033
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F026465Metagenome197N

Sequences

Protein IDFamilyRBSSequence
Ga0302149_10542491F026465N/AAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARAEVRALLSTQPHPNSFFAAKGKTMADYYDFLLHNSPRGTVANTVGKLREFAAESIQ
Ga0302149_10542493F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAHLSRSLKIVRLWNQSSALPQSRHDEMIEEEQRLANLYVAIIFEIGSAFGIEQADELKVHIEAACILDDWECPPAEQG

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