NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302144_10091830

Scaffold Ga0302144_10091830


Overview

Basic Information
Taxon OID3300028560 Open in IMG/M
Scaffold IDGa0302144_10091830 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)975
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005822Metagenome / Metatranscriptome389Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0302144_100918301F014867N/ASYDRADLLMSAGCCTFVSAALIVVIPRLGILLLELLLGLFFIGCALVARKRLRRQARSKDGSDKAKDARTRRLDRYDVFMILAVILVQTSAAGSLRRAGLSEGTVGILPLFLFAAGILLKPRAVEFVEARRKNKQDGRGSTNVGPDLAGAAPAPSSEARARAVVGAAAQNGDLE
Ga0302144_100918302F005822GGAGMKSSEQTIASTGPESIADSKTTQPPAGEGKRARAVRDAQATPPRSAAIRRRRSRHDNSETAGEERFFLASGSGNGDVPALGRECGSEAEAIIDAFRERVNFYTVSEFQTRADVGPAGEPILRKDGLKKTNPAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.