NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302144_10298799

Scaffold Ga0302144_10298799


Overview

Basic Information
Taxon OID3300028560 Open in IMG/M
Scaffold IDGa0302144_10298799 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047275Metagenome / Metatranscriptome150Y
F055877Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0302144_102987991F055877N/AYNSNPGGSTTSGVLQGGFGLDVKVWRRFSIRGEVRDFWSGTPDFPLADTGKSRQHNYFVGGGVVWHFH
Ga0302144_102987992F047275N/AVSRFTDAYESARFGNSADDAMQLPELYEEVEAAAKK

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